diff --git a/README.md b/README.md index 1329b91..eaec212 100644 --- a/README.md +++ b/README.md @@ -2,21 +2,49 @@ The goal of this work is to provide a broad description of the population activity patterns that occur in developing cerebral cortex. -The main manuscript file is [wholeBrain_main.md][] +The main manuscript file is **[wholeBrain_main.md][]** + + ## Rationale +The idea is to provide a clear and beautiful representation of the visualized activity patterns in the developing brain. -The idea is to provide a clear and beautiful visualization of the immature activity patterns in the developing brain. +### Scientific importance +A comprehensive description of the spatiotemporal activity patterns in the immature brain will be crucial to understanding the developmental dynamics that exist between intrinsic and extrinsic factors that regulate circuit development. + +* signature patterns that predict current or future behavior +* construction of self-organizing circuits (advanced robotics -- *Terminator, Skynet, Cylons*) + +### Human health importance +* neurodevelopmental disorders (autism, schizophrenia, epilepsy) +* activity-dependent structural plasticity. Implications for brain repair. +* development of brain-machine interfaces + + +### Future work +More detailed descriptions of the nature and the functions of these activity patterns can and should be performed in parallel in ongoing and future studies. +For example: + +* What is the intra- vs sub- cortical nature of barrel cortex activity (E.M.'s work) +* What is the intra- vs sub- cortical nature of ongoing activity in motor- associational-, and other non-primary sensory cortical areas? +* Relationship of imaged patterns to EEG patterns described in other studies? +* Extent to which functional correlations reflect direct synaptic connections? +* Retinal wave drive of other areas? +* Ontogenetic relationships of localized calcium domains? +* Development profile through first postnatal weeks +* Chronic developmental profile in individuals? +* Aberrant activity patterns in developmental disorder and seizure models? -We can do this because ## Workflow -Workflow will be similar to that used previously for [current opinion review][id3]. Some useful info in [currOpinRvw outline][id2]. +Writing workflow will be similar to that used previously for [current opinion review][id3]. Some useful info in [currOpinRvw outline][id2]. Instructions for [converting multimarkdown to Word document][id4] +Image processing and dataset generation will utilize custom code in the [wholeBrainDX] software project. +Datasets, and exploratory data analysis will use R code that lives inside this wholeBrain project repository. Datasets and raw data to big too be inside this git repo will be stored on external servers and linked to accordingly. [wholeBrain_main.md]: wholeBrain_main.md @@ -25,4 +53,6 @@ Instructions for [converting multimarkdown to Word document][id4] [id3]: https://github.com/ackman678/currOpinRvw/blob/master/README.md -[id4]: https://gist.github.com/ackman678/6391902 \ No newline at end of file +[id4]: https://gist.github.com/ackman678/6391902 + +[wholeBrainDX]: https://github.com/ackman678/wholeBrainDX/blob/master/README.md