url fixing
* eliminating extraneous url keys - so that file keys can be swapped to url for csljson conversions
This commit is contained in:
ackman678
99
OMEGA.bib
99
OMEGA.bib
@@ -187,12 +187,10 @@
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Pub_Date = {2017-09-20},
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Publisher = {eLife Sciences Publications, Ltd},
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Title = {Rapid whole brain imaging of neural activity in freely behaving larval zebrafish (\textit{Danio rerio})},
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Url = {https://doi.org/10.7554/eLife.28158},
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eprint = {https://doi.org/10.7554/eLife.28158},
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Volume = 6,
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Year = 2017,
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File = {papers/Cong_eLife2017.pdf},
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Bdsk-Url-1 = {https://doi.org/10.7554/eLife.28158},
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Bdsk-Url-2 = {http://dx.doi.org/10.7554/eLife.28158}}
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File = {papers/Cong_eLife2017.pdf}}
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@article{Itzhaki:2016,
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||||
Author = {Itzhaki, Ruth F and Lathe, Richard and Balin, Brian J and Ball, Melvyn J and Bearer, Elaine L and Braak, Heiko and Bullido, Maria J and Carter, Chris and Clerici, Mario and Cosby, S Louise and Del Tredici, Kelly and Field, Hugh and Fulop, Tamas and Grassi, Claudio and Griffin, W Sue T and Haas, J{\"u}rgen and Hudson, Alan P and Kamer, Angela R and Kell, Douglas B and Licastro, Federico and Letenneur, Luc and L{\"o}vheim, Hugo and Mancuso, Roberta and Miklossy, Judith and Otth, Carola and Palamara, Anna Teresa and Perry, George and Preston, Christopher and Pretorius, Etheresia and Strandberg, Timo and Tabet, Naji and Taylor-Robinson, Simon D and Whittum-Hudson, Judith A},
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@@ -228,12 +226,10 @@
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Pub_Date = {2018-07-02},
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Publisher = {eLife Sciences Publications, Ltd},
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Title = {Bidirectional encoding of motion contrast in the mouse superior colliculus},
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Url = {https://doi.org/10.7554/eLife.35261},
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eprint = {https://doi.org/10.7554/eLife.35261},
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Volume = 7,
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Year = 2018,
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File = {papers/Barchini_eLife2018.pdf},
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Bdsk-Url-1 = {https://doi.org/10.7554/eLife.35261},
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Bdsk-Url-2 = {http://dx.doi.org/10.7554/eLife.35261}}
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File = {papers/Barchini_eLife2018.pdf}}
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@article{Tallinen:2016,
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Author = {Tallinen, Tuomas and Chung, Jun Young and Rousseau, Fran{\c c}ois and Girard, Nadine and Lef{\`e}vre, Julien and Mahadevan, L.},
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@@ -248,11 +244,10 @@
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||||
Publisher = {Nature Publishing Group SN -},
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Title = {On the growth and form of cortical convolutions},
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Ty = {JOUR},
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Url = {http://dx.doi.org/10.1038/nphys3632},
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eprint = {http://dx.doi.org/10.1038/nphys3632},
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Volume = {12},
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Year = {2016},
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File = {papers/Tallinen_NaturePhysics2016.pdf},
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Bdsk-Url-1 = {http://dx.doi.org/10.1038/nphys3632}}
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File = {papers/Tallinen_NaturePhysics2016.pdf}}
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@article{Tallinen:2014,
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Abstract = {The exterior of the mammalian brain--the cerebral cortex--has a conserved layered structure whose thickness varies little across species. However, selection pressures over evolutionary time scales have led to cortices that have a large surface area to volume ratio in some organisms, with the result that the brain is strongly convoluted into sulci and gyri. Here we show that the gyrification can arise as a nonlinear consequence of a simple mechanical instability driven by tangential expansion of the gray matter constrained by the white matter. A physical mimic of the process using a layered swelling gel captures the essence of the mechanism, and numerical simulations of the brain treated as a soft solid lead to the formation of cusped sulci and smooth gyri similar to those in the brain. The resulting gyrification patterns are a function of relative cortical expansion and relative thickness (compared with brain size), and are consistent with observations of a wide range of brains, ranging from smooth to highly convoluted. Furthermore, this dependence on two simple geometric parameters that characterize the brain also allows us to qualitatively explain how variations in these parameters lead to anatomical anomalies in such situations as polymicrogyria, pachygyria, and lissencephalia.},
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@@ -1973,11 +1968,10 @@ CONCLUSIONS: This study provides preliminary evidence to suggest that athletes w
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Pages = {37-72},
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Publisher = {The Royal Society},
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Title = {The Chemical Basis of Morphogenesis},
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Url = {http://www.jstor.org/stable/92463},
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eprint = {http://www.jstor.org/stable/92463},
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Volume = {237},
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Year = {1952},
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File = {papers/Turing_PhilosophicalTransactionsoftheRoyalSocietyofLondon.SeriesB,BiologicalSciences1952.pdf},
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Bdsk-Url-1 = {http://www.jstor.org/stable/92463}}
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File = {papers/Turing_PhilosophicalTransactionsoftheRoyalSocietyofLondon.SeriesB,BiologicalSciences1952.pdf}}
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@article{Dalva:2007,
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Abstract = {Many cell adhesion molecules are localized at synaptic sites in neuronal axons and dendrites. These molecules bridge pre- and postsynaptic specializations but do far more than simply provide a mechanical link between cells. In this review, we will discuss the roles these proteins have during development and at mature synapses. Synaptic adhesion proteins participate in the formation, maturation, function and plasticity of synaptic connections. Together with conventional synaptic transmission mechanisms, these molecules are an important element in the trans-cellular communication mediated by synapses.},
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@@ -2037,11 +2031,9 @@ CONCLUSIONS: This study provides preliminary evidence to suggest that athletes w
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Pages = {3 - 24},
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Publisher = {Academic Press},
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Title = {Chapter 1 - Gene Maps and Related Histogenetic Domains in the Forebrain and Midbrain},
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Url = {https://www.sciencedirect.com/science/article/pii/B9780123742452000012},
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eprint = {https://www.sciencedirect.com/science/article/pii/B9780123742452000012},
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Year = {2015},
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File = {papers/Puelles_2015.pdf},
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Bdsk-Url-1 = {https://www.sciencedirect.com/science/article/pii/B9780123742452000012},
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Bdsk-Url-2 = {https://doi.org/10.1016/B978-0-12-374245-2.00001-2}}
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File = {papers/Puelles_2015.pdf}}
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@article{Schlaggar:2011,
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Abstract = {In this issue of Neuron, Chen and colleagues combine structural MRI and a twin-study design to investigate the influence of genetics on human cortical regionalization. Their results resonate with findings from animal studies and certain human syndromes of developmental cortical malformation.},
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@@ -9929,7 +9921,6 @@ VIDEO ABSTRACT: },
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doi = {10.1101/2021.02.23.432573},
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publisher = {Cold Spring Harbor Laboratory},
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abstract = {Functional imaging of neural cell populations is critical for mapping intra- and inter-regional network dynamics across the neocortex. Recently we showed that an unsupervised machine learning decomposition of densely sampled recordings of cortical calcium dynamics results in a collection of components comprised of neuronal signal sources distinct from optical, movement, and vascular artifacts. Here we build a supervised learning classifier that automatically separates neural activity and artifact components, using a set of extracted spatial and temporal metrics that characterize the respective components. We demonstrate that the performance of the machine classifier matches human identification of signal components in novel data sets. Further, we analyze control data recorded in glial cell reporter and non-fluorescent mouse lines that validates human and machine identification of functional component class. This combined workflow of data-driven video decomposition and machine classification of signal sources will aid robust and scalable mapping of complex cerebral dynamics.Competing Interest StatementThe authors have declared no competing interest.},
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URL = {https://www.biorxiv.org/content/10.1101/2021.02.23.432573v1},
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eprint = {https://www.biorxiv.org/content/10.1101/2021.02.23.432573v1.full.pdf},
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journal = {bioRxiv}
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}
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@@ -9942,7 +9933,6 @@ VIDEO ABSTRACT: },
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doi = {10.1101/2020.12.30.424865},
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publisher = {Cold Spring Harbor Laboratory},
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abstract = {Recording neuronal group activity across the cortical hemispheres from awake, behaving mice is essential for understanding information flow across cerebral networks. Video recordings of cerebral function comes with challenges, including optical and movement-associated vessel artifacts, and limited references for time series extraction. Here we present a data-driven workflow that isolates artifacts from calcium activity patterns, and segments independent functional units across the cortical surface. Independent Component Analysis utilizes the statistical interdependence of pixel activation to completely unmix signals from background noise, given sufficient spatial and temporal samples. We also utilize isolated signal components to produce segmentations of the cortical surface, unique to each individual{\textquoteright}s functional patterning. Time series extraction from these maps maximally represent the underlying signal in a highly compressed format. These improved techniques for data pre-processing, spatial segmentation, and time series extraction result in optimal signals for further analysis.},
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url = {https://www.biorxiv.org/content/10.1101/2020.12.30.424865v2},
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eprint = {https://www.biorxiv.org/content/10.1101/2020.12.30.424865v2.full.pdf},
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journal = {bioRxiv}}
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@@ -11942,19 +11932,17 @@ INTERPRETATION: Fetal valproate exposure has dose-dependent associations with re
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Keywords = {Software},
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Title = {igraph, The network analysis package},
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Url = {http://igraph.org},
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Year = {2013},
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Bdsk-Url-1 = {http://igraph.org/}}
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Year = {2013}}
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@url{Clauset:2004,
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@article{Clauset:2004,
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Author = {Clauset, A. and Newman, M. E. J. and Moore, C.},
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Date-Added = {2014-08-15 16:57:32 +0000},
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Date-Modified = {2014-08-15 17:00:02 +0000},
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Keywords = {Software},
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Title = {Finding community structure in very large networks},
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Url = {http://arxiv.org/pdf/cond-mat/0408187v2.pdf},
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eprint = {http://arxiv.org/pdf/cond-mat/0408187v2.pdf},
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Year = {2004},
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File = {papers/Clauset_2004.pdf},
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Bdsk-Url-1 = {http://arxiv.org/pdf/cond-mat/0408187v2.pdf}}
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File = {papers/Clauset_2004.pdf}}
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@webpage{Dollar:2014,
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Author = {Doll{\'a}r, P.},
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@@ -11964,8 +11952,7 @@ INTERPRETATION: Fetal valproate exposure has dose-dependent associations with re
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Lastchecked = {2014-08},
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Title = {Piotr's Image and Video Matlab Toolbox},
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Url = {http://vision.ucsd.edu/~pdollar/toolbox/doc/index.html},
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Year = {2014},
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Bdsk-Url-1 = {http://vision.ucsd.edu/~pdollar/toolbox/doc/index.html}}
|
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Year = {2014}}
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@inproceedings{Lucas:1981,
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Author = {Lucas, B. D. and Kanade, T.},
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@@ -11986,8 +11973,7 @@ INTERPRETATION: Fetal valproate exposure has dose-dependent associations with re
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Lastchecked = {2014-08},
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Title = {wholeBrainDX, Image analysis suite for whole brain calcium imaging},
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Url = {https://github.com/ackman678/wholeBrainDX},
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Year = {2014},
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Bdsk-Url-1 = {https://github.com/ackman678/wholeBrainDX}}
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Year = {2014}}
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@article{Newman:2004,
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Author = {Newman, M. E. J.},
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@@ -12001,12 +11987,10 @@ INTERPRETATION: Fetal valproate exposure has dose-dependent associations with re
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Pages = {066133},
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Publisher = {American Physical Society},
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Title = {Fast algorithm for detecting community structure in networks},
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Url = {http://link.aps.org/doi/10.1103/PhysRevE.69.066133},
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eprint = {http://link.aps.org/doi/10.1103/PhysRevE.69.066133},
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Volume = {69},
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Year = {2004},
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File = {papers/Newman_Phys.Rev.E2004.pdf},
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Bdsk-Url-1 = {http://link.aps.org/doi/10.1103/PhysRevE.69.066133},
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Bdsk-Url-2 = {http://dx.doi.org/10.1103/PhysRevE.69.066133}}
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File = {papers/Newman_Phys.Rev.E2004.pdf}}
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@article{Gaspar:2003,
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Abstract = {New genetic models that target the serotonin system show that transient alterations in serotonin homeostasis cause permanent changes to adult behaviour and modify the fine wiring of brain connections. These findings have revived a long-standing interest in the developmental role of serotonin. Molecular genetic approaches are now showing us that different serotonin receptors, acting at different developmental stages, modulate different developmental processes such as neurogenesis, apoptosis, axon branching and dendritogenesis. Our understanding of the specification of the serotonergic phenotype is improving. In addition, studies have revealed that serotonergic traits are dissociable, as there are populations of neurons that contain serotonin but do not synthesize it.},
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@@ -12308,11 +12292,10 @@ From http://braininfo.rprc.washington.edu/Source.aspx?ID=90&questID=1350:
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Lccn = {58013447},
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Publisher = {University of Wisconsin Press},
|
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Title = {Biological and biochemical bases of behavior},
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Url = {http://books.google.com/books?id=L8M0AAAAMAAJ},
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eprint = {http://books.google.com/books?id=L8M0AAAAMAAJ},
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Year = {1958},
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File = {papers/Harlow_1958.pdf},
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Bdsk-Url-1 = {http://books.google.com/books?id=L8M0AAAAMAAJ},
|
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Bdsk-Url-2 = {http://braininfo.rprc.washington.edu/Source.aspx?ID=90&questID=1350}}
|
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Bdsk-Url-1 = {http://braininfo.rprc.washington.edu/Source.aspx?ID=90&questID=1350}}
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@article{Wong-Riley:1980,
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Abstract = {The posteromedial barrel subfield of the somatosensory cortex of mice was examined histochemically for cytochrome oxidase activity (cytochrome c oxidase; ferrocytochrome c:oxygen oxidoreductase, EC 1.9.3.1). In normal mice a high enzymatic activity was found within the barrel hollows, rather than in the sides and septa. Electron microscopic examination indicated that within the hollows reactive mitochondria reside in many dendrites, in some axonal terminals, and in a few neuronal perikarya. After neonatal cauterization of selected row(s) of vibrissae, the corresponding row(s) of barrels appeared as narrowed fused band(s) and their cytochrome oxidase activity was much reduced. Removal of vibrissae in the adult, by either cauterization or repeated plucking, did not cause size changes of cortical barrels. However, there was a significant decrease in the oxidative enzymatic activity within these barrels. Thus, the deprivation of sensory input through damage to, or removal of, the peripheral sensory organ induces an enzymatic response in neurons that are at least two to three synapses away from the periphery.},
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@@ -15297,9 +15280,8 @@ CONCLUSIONS: These results strongly suggest that early, acetylcholine-dependent
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Library-Id = {2007047445},
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Publisher = {MIT Press},
|
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Title = {Eye, retina, and visual system of the mouse},
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Url = {http://www.loc.gov/catdir/toc/ecip085/2007047445.html},
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Year = {2008},
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Bdsk-Url-1 = {http://www.loc.gov/catdir/toc/ecip085/2007047445.html}}
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eprint = {http://www.loc.gov/catdir/toc/ecip085/2007047445.html},
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Year = {2008}}
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@book{Paxinos:1995,
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Address = {San Diego},
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@@ -15341,9 +15323,8 @@ CONCLUSIONS: These results strongly suggest that early, acetylcholine-dependent
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Library-Id = {94026442},
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Publisher = {Academic Press},
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Title = {The rat nervous system},
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Url = {http://www.loc.gov/catdir/description/els032/94026442.html},
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Year = {1995},
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||||
Bdsk-Url-1 = {http://www.loc.gov/catdir/description/els032/94026442.html}}
|
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eprint = {http://www.loc.gov/catdir/description/els032/94026442.html},
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Year = {1995}}
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@book{Paxinos:2004,
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Address = {Amsterdam},
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@@ -15383,9 +15364,8 @@ CONCLUSIONS: These results strongly suggest that early, acetylcholine-dependent
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Library-Id = {2004270372},
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Publisher = {Elsevier Academic Press},
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Title = {The rat nervous system},
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Url = {http://www.loc.gov/catdir/toc/els051/2004270372.html},
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Year = {2004},
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Bdsk-Url-1 = {http://www.loc.gov/catdir/toc/els051/2004270372.html}}
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eprint = {http://www.loc.gov/catdir/toc/els051/2004270372.html},
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Year = {2004}}
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@article{Lim:2012,
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Abstract = {We have mapped intracortical activity in vivo independent of sensory input using arbitrary point channelrhodopsin-2 (ChR2) stimulation and regional voltage sensitive dye imaging in B6.Cg-Tg (Thy1-COP4/EYFP)18Gfng/J transgenic mice. Photostimulation of subsets of deep layer pyramidal neurons within forelimb, barrel, or visual primary sensory cortex led to downstream cortical maps that were dependent on synaptic transmission and were similar to peripheral sensory stimulation. ChR2-evoked maps confirmed homotopic connections between hemispheres and intracortical sensory and motor cortex connections. This ability of optogentically activated subpopulations of neurons to drive appropriate downstream maps suggests that mechanisms exist to allow prototypical cortical maps to self-assemble from the stimulation of neuronal subsets. Using this principle of map self-assembly, we employed ChR2 point stimulation to map connections between cortical areas that are not selectively activated by peripheral sensory stimulation or behavior. Representing the functional cortical regions as network nodes, we identified asymmetrical connection weights in individual nodes and identified the parietal association area as a network hub. Furthermore, we found that the strength of reciprocal intracortical connections between primary and secondary sensory areas are unequal, with connections from primary to secondary sensory areas being stronger than the reciprocal.},
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@@ -24736,7 +24716,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
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Volume = {12},
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Year = {1989},
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File = {papers/Tsien_AnnuRevNeurosci1989.pdf},
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Url = {http://dx.doi.org/10.1146/annurev.ne.12.030189.001303}}
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eprint = {http://dx.doi.org/10.1146/annurev.ne.12.030189.001303}}
|
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@article{Tsien:1990,
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Author = {Tsien, R W and Tsien, R Y},
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@@ -24753,7 +24733,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
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Volume = {6},
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Year = {1990},
|
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File = {papers/Tsien_AnnuRevCellBiol1990.pdf},
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Url = {http://dx.doi.org/10.1146/annurev.cb.06.110190.003435}}
|
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eprint = {http://dx.doi.org/10.1146/annurev.cb.06.110190.003435}}
|
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|
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@article{Miyawaki:1997,
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Abstract = {Important Ca2+ signals in the cytosol and organelles are often extremely localized and hard to measure. To overcome this problem we have constructed new fluorescent indicators for Ca2+ that are genetically encoded without cofactors and are targetable to specific intracellular locations. We have dubbed these fluorescent indicators 'cameleons'. They consist of tandem fusions of a blue- or cyan-emitting mutant of the green fluorescent protein (GFP), calmodulin, the calmodulin-binding peptide M13, and an enhanced green- or yellow-emitting GFP. Binding of Ca2+ makes calmodulin wrap around the M13 domain, increasing the fluorescence resonance energy transfer (FRET) between the flanking GFPs. Calmodulin mutations can tune the Ca2+ affinities to measure free Ca2+ concentrations in the range 10(-8) to 10(-2) M. We have visualized free Ca2+ dynamics in the cytosol, nucleus and endoplasmic reticulum of single HeLa cells transfected with complementary DNAs encoding chimaeras bearing appropriate localization signals. Ca2+ concentration in the endoplasmic reticulum of individual cells ranged from 60 to 400 microM at rest, and 1 to 50 microM after Ca2+ mobilization. FRET is also an indicator of the reversible intermolecular association of cyan-GFP-labelled calmodulin with yellow-GFP-labelled M13. Thus FRET between GFP mutants can monitor localized Ca2+ signals and protein heterodimerization in individual live cells.},
|
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@@ -24869,7 +24849,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
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Volume = {324},
|
||||
Year = {1986},
|
||||
File = {papers/Grinvald_Nature1986.pdf},
|
||||
Url = {http://dx.doi.org/10.1038/324361a0}}
|
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eprint = {http://dx.doi.org/10.1038/324361a0}}
|
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|
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@article{Xu:2007a,
|
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Abstract = {Neuronal interactions between primary and secondary visual cortical areas are important for visual processing, but the spatiotemporal patterns of the interaction are not well understood. We used voltage-sensitive dye imaging to visualize neuronal activity in rat visual cortex and found visually evoked waves propagating from V1 to other visual areas. A primary wave originated in the monocular area of V1 and was "compressed" when propagating to V2. A reflected wave initiated after compression and propagated backward into V1. The compression occurred at the V1/V2 border, and local GABAA inhibition is important for the compression. The compression/reflection pattern provides a two-phase modulation: V1 is first depolarized by the primary wave, and then V1 and V2 are simultaneously depolarized by the reflected and primary waves, respectively. The compression/reflection pattern only occurred for evoked waves and not for spontaneous waves, suggesting that it is organized by an internal mechanism associated with visual processing.},
|
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@@ -26903,7 +26883,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
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Volume = {5},
|
||||
Year = {2004},
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File = {papers/Grinvald_NatRevNeurosci2004.pdf},
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Url = {http://dx.doi.org/10.1038/nrn1536}}
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eprint = {http://dx.doi.org/10.1038/nrn1536}}
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@article{Homma:2009,
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Abstract = {This chapter presents three examples of imaging brain activity with voltage- or calcium-sensitive dyes. Because experimental measurements are limited by low sensitivity, the chapter then discusses the methodological aspects that are critical for optimal signal-to-noise ratio. Two of the examples use wide-field (1-photon) imaging and the third uses two-photon scanning microscopy. These methods have relatively high temporal resolution ranging from 10 to 10,000 Hz. The three examples are the following: (1) Internally injected voltage-sensitive dye can be used to monitor membrane potential in the dendrites of invertebrate and vertebrate neurons in in vitro preparations. These experiments are directed at understanding how individual neurons convert the complex input synaptic activity into the output spike train. (2) Recently developed methods for staining many individual cells in the mammalian brain with calcium-sensitive dyes together with two-photon microscopy made it possible to follow the spike activity of many neurons simultaneously while in vivo preparations are responding to stimulation. (3) Calcium-sensitive dyes that are internalized into olfactory receptor neurons in the nose will, after several days, be transported to the nerve terminals of these cells in the olfactory bulb glomeruli. There, the population signals can be used as a measure of the input from the nose to the bulb. Three kinds of noise in measuring light intensity are discussed: (1) Shot noise from the random emission of photons from the preparation. (2) Extraneous (technical) noise from external sources. (3) Noise that occurs in the absence of light, the dark noise. In addition, we briefly discuss the light sources, the optics, and the detectors and cameras. The commonly used organic voltage and ion sensitive dyes stain all of the cell types in the preparation indiscriminately. A major effort is underway to find methods for staining individual cell types in the brain selectively. Most of these efforts center around fluorescent protein activity sensors because transgenic methods can be used to express them in individual cell types.},
|
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@@ -105341,7 +105321,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
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Uuid = {7DDDA35F-289A-4EC1-8D87-95DDEC11F019},
|
||||
Volume = {32},
|
||||
Year = {2001},
|
||||
Url = {http://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?db=m&form=6&dopt=r&uid=11719211}}
|
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eprint = {http://www.ncbi.nlm.nih.gov/htbin-post/Entrez/query?db=m&form=6&dopt=r&uid=11719211}}
|
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|
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@article{Waclaw:2006,
|
||||
Abstract = {The molecular mechanisms that regulate the production and diversity of olfactory bulb interneurons remain poorly understood. With the exception of the GABAergic/dopaminergic subtype in the glomerular layer, no information exists concerning the generation of the other subtypes. Here we show that the recently identified zinc finger transcription factor Sp8 is expressed in neurogenic regions, which give rise to olfactory bulb interneurons at embryonic and postnatal time points and remains expressed in the calretinin-expressing and GABAergic/nondopaminergic interneurons of the glomerular layer. Conditional inactivation of Sp8 in the embryonic ventral telencephalon reveals a requirement for the normal generation of these interneuron subtypes. Sp8 conditional mutants exhibit an increase in cell death within the lateral ganglionic eminence and rostral migratory stream. Moreover, mutant neuroblasts/interneurons are misspecified and display abnormal migration patterns in the olfactory bulb, indicating that Sp8 contributes to olfactory bulb interneuron diversity by regulating the survival, migration, and molecular specification of neuroblasts/interneurons.},
|
||||
@@ -111704,7 +111684,7 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
||||
nlmuniqueid = {101579614}
|
||||
}
|
||||
|
||||
@article {Barson468348,
|
||||
@article {Barson2018,
|
||||
author = {Barson, D and Hamodi, AS and Shen, X and Lur, G and Constable, RT and Cardin, JA and Crair, MC and Higley, MJ},
|
||||
title = {Simultaneous mesoscopic and two-photon imaging of neuronal activity in cortical circuits},
|
||||
elocation-id = {468348},
|
||||
@@ -111712,7 +111692,6 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
||||
doi = {10.1101/468348},
|
||||
publisher = {Cold Spring Harbor Laboratory},
|
||||
abstract = {Spontaneous and sensory-evoked activity propagates across spatial scales in the mammalian cortex but technical challenges have generally precluded establishing conceptual links between the function of local circuits of neurons and brain-wide network dynamics. To solve this problem, we developed a method for simultaneous cellular-resolution two-photon calcium imaging of a local microcircuit and mesoscopic widefield calcium imaging of the entire cortical mantle in awake, behaving mice. Our method employs an orthogonal axis design whereby the mesoscopic objective is oriented downward directly above the brain and the two-photon objective is oriented horizontally, with imaging performed through a glass right angle microprism implanted in the skull. In support of this method, we introduce a suite of analysis tools for relating the activity of individual cells to distal cortical areas, as well as a viral method for robust and widespread gene delivery in the juvenile mouse brain. We use these methods to characterize the diversity of associations of individual, genetically-defined neurons with cortex-wide network motifs.},
|
||||
URL = {https://www.biorxiv.org/content/early/2018/11/11/468348},
|
||||
eprint = {https://www.biorxiv.org/content/early/2018/11/11/468348.full.pdf},
|
||||
journal = {bioRxiv}
|
||||
}
|
||||
@@ -112592,20 +112571,6 @@ CONCLUSIONS: Centrifugal axons in the macaque retina are part of the system of a
|
||||
nlmuniqueid = {0375404}
|
||||
}
|
||||
|
||||
@article{Peters_2019,
|
||||
doi = {10.1038/s41567-019-0732-0},
|
||||
url = {https://doi.org/10.1038%2Fs41567-019-0732-0},
|
||||
year = 2019,
|
||||
month = {dec},
|
||||
publisher = {Springer Science and Business Media {LLC}},
|
||||
volume = {15},
|
||||
number = {12},
|
||||
pages = {1216--1221},
|
||||
author = {Ole Peters},
|
||||
title = {The ergodicity problem in economics},
|
||||
journal = {Nature Physics}
|
||||
}
|
||||
|
||||
@article{Aruljothi2020,
|
||||
title = {Functional Localization of an Attenuating Filter within Cortex for a Selective Detection Task in Mice.},
|
||||
author = {Aruljothi, Krithiga and Marrero, Krista and Zhang, Zhaoran and Zareian, Behzad and Zagha, Edward},
|
||||
|
||||
Reference in New Issue
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